Department of Plant, Soil and Microbial Sciences Bean Breeding and Genetics

Refereed Publications for J.D. Kelly

Book Chapters for J.D. Kelly

Non-Refereed Publications for J.D. Kelly 

 

Refereed Publications

 

2018

Alladassi, B.M.E., S.T. Nkalubo, C. Mukankusi, H.N. Kayaga, P. Gibson, R. Edema, C.A. Urrea, J.D. Kelly, and P.R. Rubaihayo. 2018. Identification of common bean genotypes with dual leaf and pod resistance to common bacterial blight disease in Uganda. African Crop Science Journal 26:63-77.

Cappa, C., J. D. Kelly, and P. K.W. Ng. 2018. Seed characteristics and physicochemical properties of powders of 25 edible dry bean varieties. Food Chemistry 253:305–313. doi.org/10.1016/j.foodchem.2018.01.048

Kelly, J.D., G.V. Varner, P. N. Miklas, K. A. Cichy and E.M. Wright. 2018. Registration of ‘Cayenne’ small red bean. J. Plant Regist. 12:194–198: doi:10.3198/jpr2017.05.0033crc

Kelly, J.D., G.V. Varner, M.I. Chilvers, K. A. Cichy and E.M. Wright. 2018. Registration of ‘Red Cedar’ dark red kidney bean. J. Plant Regist. 12:199–202 doi:10.3198/jpr2017.05.0034crc

Mendoza, F.A., K.A. Cichy, C. Sprague, A. Goffnett, R. Lu, and J.D. Kelly. 2018. Prediction of canned black bean texture (Phaseolus vulgarisL.) from intact dry seeds using visible/near-infrared spectroscopy and hyperspectral imaging data. J. Sci. Food Agric.98: 283–290. doi: 10.1002/jsfa.8469

Wang, W., J.L. Jacobs, M.I. Chilvers, C. M. Mukankusi, J.D. Kelly, and K.A. Cichy. 2018. QTL analysis of Fusarium root rot resistance in an Andean x Middle American RIL population. Crop Sci. 58:1166–1180.doi:10.2135/cropsci2017.10.0608

2017

Ai, Y., Y. Jin, J. D. Kelly, and P. K.W. Ng. 2017. Composition,functional properties, starch digestibility, and cookie-baking performance of drybean powders from 25 Michigan-grown varieties.  Cereal Chemistry 94:400-408. doi: 10.1094/cchem-04-16-0089-r

Alladassi,B.M.E.,  S.T.Nkalubo, C.Mukankusi, E.S. Mwale, P.Gibson, R.Edema, C.A. Urrea, J.D. Kelly, and P.R. Rubaihayo. 2017.Inheritance of resistance to common bacterial blight in four selected common bean (Phaseolus vulgarisL.) genotypes.J. Plant Breed. Crop Sci.9:71-78. doi: 10.5897/JPBCS2017.0644

Heilig, J.A. J. S. Beaver, E. M. Wright, Q. Song, and J. D. Kelly. 2017. QTL analysis of symbiotic nitrogen fixation in a black bean population. Crop Sci. 57: 118-129. doi:10.2135/cropsci2016.05.0348

Heilig, J.A., E.M. Wright, and J.D. Kelly. 2017. Symbiotic N fixation of black and navy beans under organic production systems. Agron. J.109:1-8. doi: 10.2134/agronj2017.01.0051

Kamfwa, K., D. Zhao, J. D. Kelly and K. A. Cichy. 2017. Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation. PLoS ONE 12(2):e0172141. doi:10.1371/journal.pone.017214

McClean, P.E., S.M. Moghaddam, A-F. Lopez-Millan, M. A. Brick, J. D. Kelly, P. N. Miklas, J. M. Osorno, T. G. Porch, C.A. Urrea, A. Soltani and M. A. Gruzak. 2017. Phenotypic diversity for seed element concentration in North American dry bean germplasm of Middle American Ancestry. Crop Sci. 57:3129-3144. doi:10.2135/cropsci2017.04.0244

Mendoza, F.A., J.D. Kelly, and K.A. Cichy. 2017. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using a color imaging technique.  International Journal of Food Properties 20:83-99. doi:10.1080/10942912.2015.1136939

Odogwu, B.A., S. T. Nkalubo, C. Mukankusi, T. Odong, H. E. Awale, P. Rubaihayo, and J. D. Kelly. 2017. Phenotypic and genotypic screening for rust resistance in common bean germplasm in Uganda. Euphytica 213:49. doi: 10.1007/s10681-016-1795-y

Padder, B.A., P.N. Sharma, H.E. Awale, and J.D. Kelly. 2017. Colletotrichum lindemuthianum, the causal agent of bean anthracnose. J. Plant Pathology 99: 317-330. doi: 10.4454/jpp.v99i2.3867

Rossman, D.R., A. Rojas, J.L. Jacobs, C. Mukankusi, J.D. Kelly, and M.I. Chilvers. 2017. Pathogenicity and virulence of soilborne oomycetes on dry bean (Phaseolus vulgaris). Plant Disease 101:1851-1859.doi.org/10.1094/PDIS-02-17-0178-RE

Traub, J., J. D. Kelly, and W. Loescher. 2017. Early metabolic and photosynthetic responses to drought stress in common and tepary bean. Crop Sci. 57:1-17.  doi:10.2135/cropsci2016.09.0

2016
Ai, Y., K A. Cichy, J. B. Harte, J. D. Kelly, and P. K.W. Ng. 2016. Effects of extrusion cooking on the chemical composition and functional properties of dry bean powders. Food Chemistry 211:538–545. doi:10.1016/j.foodchem.2016.05.095

Hoyos-Villegas, V., E. M. Wright and J.D. Kelly. 2016. GGE biplot analysis of yield associations with root traits in a Mesoamerican bean diversity panel. Crop Sci. 56:1081-1094. doi:10.2135/cropsci2015.10.0609

Hoyos-Villegas, V., Q. Song, J.D. Kelly. 2016. Genomewide association analysis for drought tolerance and associated traits in common bean. The Plant Genome 9: doi:10.3835/plantgenome2015.12.0122

Hoyos-Villegas, V., Q. Song, E.M. Wright, S. E. Beebe and J.D. Kelly. 2016. Joint linkage QTL mapping for yield and agronomic traits in a composite map of three common bean RIL populations. Crop Sci. 56:2546–2563. doi:10.2135/cropsci2016.01.0063.

Isaacs, K.B., S.S. Snapp, J.D. Kelly and K. R. Chung. 2016. Farmer knowledge identifies competitive bean ideotype for maize-bean intercrop systems in Rwanda. Agriculture & Food Security 5:15. doi 10.1186/s40066-016-0062-8

Kelly, J.D., G.V. Varner, S. Hooper, K.A. Cichy, and E.M. Wright. 2016. Registration of ‘Samurai’ otebo bean. J. Plant Registrations 10:109-114. doi:10.3198/jpr2015.09.0051crc.

Mendoza, F.A, J. D. Kelly, and K. A. Cichy. 2016. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using machine vision. International Journal of Food Properties, doi:10.1080/10942912.2015.1136939.

Moghaddam, S.M., S. Mamidi, J. M. Osorno, R. Lee, M. Brick, J. Kelly, P. Miklas, C. Urrea, Q. Song, P. Cregan, J. Grimwood, J. Schmutz, and P. E. McClean. 2016. Genome-wide association study identifies candidate loci underlying agronomic traits in a Middle American diversity panel of common bean. The Plant Genome 9: doi: 10.3835/plantgenome2016.02.0012

Nakedde, T., F. J. Ibarra-Perez, C. Mukankusi, J. G. Waines, and J. D. Kelly. 2016. Mapping of QTL associated with Fusarium root rot resistance and root architecture traits in black beans. Euphytica 212: 51-63. doi: 10.1007/s10681-016-1755-6

Odogwu, B.A., S. T. Nkalubo, C. Mukankusi, P. Paparu, P. Rubaihayo, J. D. Kelly, and J. Steadman. 2016. Prevalence and variability of the common bean rust in Uganda. African Journal of Agricultural Research. 11(49): 4990-4999. doi: 10.5897/AJAR2016.11600

Padder, B.A., K. Kamfwa, H.E. Awale and J. D. Kelly. 2016. Transcriptome profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum pathosystem. PLoS ONE 11(11): e0165823.doi:10.1371/journal.pone.0165823.

Zuiderveen, G.H., B. A. Padder, K. Kamfwa, Q. Song and J. D. Kelly. 2016. Genome-wide association study of anthracnose resistance in Andean beans. PLoS ONE 11(6): e0156391doi:10.1371/journal.pone.0156391

2015
Hoyos-Villegas, V., W. Mkwaila, P.B. Cregan and J.D. Kelly. 2015. QTL analysis of white mold avoidance in pinto bean (Phaseolus vulgaris). Crop Sci. 55:2116-2129. doi:10.2135/cropsci2015.02.0106.

Kamfwa, K., K.A. Cichy and J.D. Kelly. 2015. Genome-wide association study of agronomic traits in common bean. The Plant Genome 8: doi:10.3835/plantgenome2014.09.0059.

Kamfwa, K., K.A. Cichy and J.D. Kelly. 2015. Genome-wide association analysis of symbiotic nitrogen fixation in common bean. Theor. Appl. Genet. 128:1999-2017. doi. 10.1007/s00122-015-2562-5.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Alpena’ navy bean. J. Plant Registrations 9:10-14. doi:10.3198/jpr2014.04.0025crc.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Zenith’ black bean. J. Plant Registrations 9:15-20. doi:10.3198/jpr2014.05.0035crc.

Kelly, J.D., J. Trapp, P.N. Miklas, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Desert Song’ Flor de Junio and ‘Gypsy Rose’ Flor de Mayo common bean cultivars J. Plant Registrations 9:133-137. doi:10.3198/jpr2014.05.0028crc.

Sousa, L.L., A. O. Gonçalves, M. C. Gonçalves-Vidigal, G. F. Lacanallo, A. C. Fernandez, H. Awale and J. D. Kelly. 2015. Genetic characterization and mapping of anthracnose resistance of Corinthiano common bean landrace cultivar. Crop Sci. 55:1900-1910. doi:10.2135/cropsci2014.09.0604.

Burt, A.J., H. M. William, G. Perry, R. Khanal, K. P. Pauls, J. D. Kelly, A. Navabi. 2015. Candidate gene identification with SNP marker-based fine mapping of anthracnose resistance gene Co-4 in common bean. PLoS ONE 10(10): e0139450. doi:10.1371/journal.pone.0139450.

2014
Brisco, E.I., T.G. Porch, P.B. Cregan, and J.D. Kelly. 2014 Quantitative trait loci associated with resistance to Empoasca in common bean. Crop Sci. 54: doi: 10.2135/cropsci2014.02.0159.

Cichy, K.A., A. Fernandez, A. Kilian, J.D. Kelly, C.H. Galeano, S. Shaw, M. Brick, D. Hodkinson, and E. Troxtell. 2014. QTL analysis of canning quality and color retention in black beans (Phaseolus vulgaris L.). Molecular Breeding 33:139-154. doi: 10.1007/s11032-013-9940-y.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2014. Registration of ‘Powderhorn’ great northern bean. J. Plant Registrations 8:1-4. doi:10.3198/jpr2013.05.0020crc.

Mendoza, F.A., K. Cichy, R. Lu and J.D. Kelly. 2014. Evaluation of canning quality traits in black beans (Phaseolus vulgaris L.) by visible/near-infrared spectroscopy. Food Bioprocess Technol.7:2666-2678. doi: 10.1007/s11947-014-1285-y.

Miklas, P.N., J. D. Kelly, J. R. Steadman and S. McCoy. 2014. Registration of partial white mold resistant pinto bean germplasm line USPT-WM-12. J. Plant Registrations 8:183–186.

Mukeshimana, G., L. Butare, P.B. Cregan, M. W. Blair and J. D. Kelly. 2014. Quantitative trait loci associated with drought tolerance in common bean. Crop Sci. 54:923-938. doi: 10.2135/cropsci2013.06.0427.

Mukeshimana, G., A.L. Lasley, W.H. Loescher and J.D. Kelly. 2014. Identification of shoot traits related to drought tolerance in common bean seedlings. J. Amer. Soc. Hort. Sci. 139:299–309.

Sousa, L.L., A. S. Cruz, P. S. Vidigal Filho, V. A. Vallejo, J. D. Kelly and M.C. Gonçalves-Vidigal. 2014. Genetic mapping of the resistance allele Co-52 to Colletotrichum lindemuthianum in the common bean MSU 7-1 line. Aust. J. Crop Science 8:317-323.

Schmutz, J., P. McClean, J.D. Kelly, S.A. Jackson. 2014. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics.46:707-713. doi:10.1038/ng.3008.

Oblessuc, P.R., R. M. Baroni, G. da Silva Pereira, A. F. Chioratto, S.A.M. Carbonell, B. Briñez, L. Da Costa E Silva, A. A. F. Garcia, L.E.A. Camargo, J. D. Kelly, and L. L. Benchimol-Reis. 2014. Quantitative analysis of race-specific resistance to Colletotrichum lindemuthianum in common bean. Molecular Breeding 34:1313-1329. doi:10.1007/s11032-014-0118-z.

Musoni, A., J. Kayumba, L. Butare, F. Mukamuhirwa, E. Murwanashyaka, D. Mukankubana, J.D. Kelly, J. Ininda, and D. Gahakwa. 2014. Innovations to overcome staking challenges to growing climbing beans by smallholders in Rwanda. p. 129-136. In: B. Vanlauwe et al. (eds.), Challenges and Opportunities for Agricultural Intensification of the Humid Highland Systems of Sub-Saharan Africa. Springer International Publishing Switzerland doi 10.1007/978-3-319-07662-1_11.

Vandemark, G.J., M.A. Brick, J.M. Osorno, J.D. Kelly, and C.A. Urrea. 2014. Edible Grain Legumes. p. 87-123. In: S. Smith, B. Diers, J. Specht, & B. Carver (eds.). Yield Gains in Major U.S. Field crops. CSSA Special Pub. 33, Madison, WI.

2013
Ferreira, J.J., A. Campa, and J.D. Kelly. 2013. Organization of genes conferring resistance to anthracnose in common bean, pp. 151-181. In R. K. Varshney and R. Tuberosa (eds.) Translational Genomics for Crop Breeding, Volume I: Biotic Stresses. John Wiley & Sons, Inc.

Kelly, J.D. and K.A. Cichy. 2013. Dry Bean Breeding and Production Technologies, pp. 23-54. In: Dry Beans and Pulses: Production, Processing, and Nutrition. Editors: M. Siddiq, M.A. Uebersax, Wiley-Blackwell Publishing Co. Oxford U.K. doi: 10.1002/9781118448298.ch2.

Mukeshimana, G., Y. Ma, A. E. Walworth, G-q. Song, and J. D. Kelly. 2013. Factors influencing regeneration and Agrobacterium tumefaciens-mediated transformation of common bean (Phaseolus vulgaris L.). Plant Biotechnol. Rep. 7:59-70. doi:10.1007/s11816-012-0237-0.

Miklas, P.N., L. D. Porter, J. D. Kelly, and J. R. Myers 2013. Characterization of white mold disease avoidance in common bean. European J. Plant Pathology. 135:525–543. doi:10.1007/s10658-012-0153-8.

Porch, T.G., J. S. Beaver, D. G. Debouck, S. Jackson, J.D. Kelly, and H. Dempewolf. 2013. Use of wild relatives and closely related species to adapt common bean to climate change. Agronomy 3:433-461.

2012
Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2012. Registration of ‘Rosetta’ pink bean. J. Plant Reg. 6: 229-232.

Kelly, J.D., G.V. Varner, W. Mkwaila, K.A. Cichy, and E.M. Wright. 2012. Registration of ‘Eldorado’ pinto bean. J. Plant Reg. 6: 233-237.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2012. Registration of ‘Snowdon’ white kidney bean. J. Plant Reg. 6: 239-242.

Heilig, J.A., and J.D. Kelly. 2012. Performance of dry bean genotypes grown under organic and conventional production systems in Michigan. Agron. J. 104:1485-1492.

2011
Mkwaila, W., K.A. Terpstra, M. Ender, and J.D. Kelly. 2011. Identification of QTL for resistance to white mold in wild and landrace germplasm of common bean. Plant Breeding130:665-672. doi:10.1111/j.1439-0523.2011.01876.x

Miklas, P.N., S. P. Singh, H. Terán, J. D. Kelly, and J. R. Smith. 2011. Registration of common bacterial blight resistant cranberry dry bean germplasm line USCR-CBB-20. J. Plant Reg. 5:98-102.

Wright, E.M., and J.D. Kelly. 2011: Mapping QTL for seed yield and canning quality following processing of black bean (Phaseolus vulgaris L.). Euphytica179:471–484. doi 10.1007/s10681-011-0369-2.

2010
Kelly, J.D., G.V. Varner, and E.M. Wright. 2010. Registration of Bellagio cranberry bean. J. Plant Reg. 4: 171-174.

Kelly, J.D., G.V.Varner, and B. Long. 2010. Registration of Santa Fe pinto bean. J. Plant Registrations 4:12-16.

Kwapata, K., R. Sabzikar, M. B. Sticklen, and J. D. Kelly. 2010. In vitro regeneration and morphogenesis studies in common bean. Plant Cell Tiss. Organ. Cult.: J. Plant Biotechnology. 100:97-105.

Musoni, A., P. Kimani, R. D. Narla, R. Buruchara and J. Kelly. 2010. Inheritance of Fusarium wilt (Fusarium oxysporum f. sp. phaseoli) resistance in climbing beans. African J. Agric. Res. 5(5):399-404.

2009
Cichy, K.A., M. W. Blair, C. H. Galeno-Mendoza, S. S. Snapp, and J. D. Kelly. 2009. QTL analysis of root architecture traits and low phosphorus tolerance in an Andean bean population. Crop Sci. 49:59-68.

Kelly, J.D., G.V.Varner, P. OBoyle, and B. Long. 2009. Registration of Zorro black bean. J. Plant Registrations 3:226-230.

Kelly, J.D., G.V.Varner, B. Roman, and B. Long. 2009. Registration of Fuji Otebo bean. J. Plant Registrations 3:223-225.

Tako, E., R.P. Glahn, J. M. Laparra, R.M. Welch, X. Lei, J.D. Kelly, M.A. Rutzke and D.D. Miller. 2009. Iron and zinc bioavailabilities to pigs from red and white beans (Phaseolus vulgaris L.) are similar. J. Agric. Food Chem. 57: 3134-3140.

Vallejo, V., and J. D. Kelly. 2009. New insights into the anthracnose resistance of common bean landrace G 2333. The Open Horticulture J. 2:29-33.

2008
Awale, H. E. Falconi, J. C. Villatoro and J.D. Kelly. 2008. Control y caracterizacion de aislamientos de Colletotrichum lindemuthianum de Ecuador y Guatemala. Revista Agronomía Mesoamericana 19: 1-6.

Ender, M., K. Terpstra, and J.D. Kelly. 2008. Marker-assisted selection for white mold resistance in common bean. Mol. Breed. 21:149-157.

Ernest, E.G., E. Falconí, E. Peralta and J. D. Kelly. 2008. Uso de una encuesta a agricultores para orientar el fitomejoramiento de frijol en Ecuador. Revista Agronomía Mesoamericana 19: 7-18.

Vallejo, V.A., and J. D. Kelly. 2008. Molecular tagging and genetic characterization of alleles at the Co-1 anthracnose resistance locus in common bean. ICFAI Univ. J. Genetics & Evolution 1:7-20. Available at SSRN: http://ssrn.com/abstract=1306249 .

2007
Acosta-Gallegos, J.A., J.D. Kelly, and P. Gepts. 2007. Prebreeding in common bean and use of genetic diversity from wild germplasm. Crop Sci. 47(S3): S44-S59.

Ando, K., R. Grumet, K. Terpstra, and J. D. Kelly. 2007. Manipulation of plant architecture to enhance crop disease control. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition, and Natural Resources. Vol. 2. No. 026. 8pp.

Miklas, P.N., K.M. Larsen, K.A. Terpstra, D.C. Hauf, K.F. Grafton, and J.D. Kelly. 2007. QTL analysis of ICA Bunsi-derived resistance to white mold in a pinto x navy bean cross. Crop Sci. 47:174-179.

O Boyle, P. D., W. W. Kirk, and J. D. Kelly. 2007. Use of marker-assisted selection to breed for resistance to common bacterial blight in common bean. J. Amer. Soc. Hort. Sci. 132:381-386.

Pastor-Corrales, M.A., J.D. Kelly, J.R. Steadman, D.T. Lindgren, J.R. Stavely, and D.P. Coyne. 2007. Registration of six great northern bean germplasm lines developed for enhanced resistance to rust and bean common mosaic and necrosis potyviruses: BelMiNeb-RMR-8,-9,-10,-11,-12,-and -13. J. Plant Registrations 1:77-79.

Vidigal Filho, P.S., M.C. Gonçalves-Vidigal, J.D. Kelly, and W.W. Kirk. 2007. Sources of resistance to anthracnose in traditional common bean cultivars from Paraná, Brazil. J. Phytopathology 155:108-113.

2006
Gonçalves-Vidigal, M.C., and J.D. Kelly. 2006. Inheritance of anthracnose resistance in the common bean cultivar Widusa. Euphytica151:411-419.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2006. Registration of Sedona pink bean. Crop Sci 46: 2707-2708.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2006. Registration of Capri cranberry bean. Crop Sci 46: 2706-2707.

Miklas, P.N., J.D. Kelly, S.E. Beebe, and M. W. Blair. 2006. Common bean breeding for resistance against biotic and abiotic stresses: From classical to MAS breeding. Euphytica 147:105-131.

Miklas, P.N. K.F. Grafton, D. Hauf, and J. D. Kelly. 2006. Registration of partial white mold resistant pinto bean germplasm line USPT-WM-1. Crop Sci. 46: 2339.

2005
Caixeta, E.T., A. Borém, and J.D. Kelly. 2005. Development of microsatellite markers based on BAC common bean clones. Crop Breeding and Applied Biotechnology, 5(2):125-133.

Ender, M., and J.D. Kelly. 2005. Identification of QTL associated with white mold resistance in common bean. Crop Sci. 45:2482-2490.

Ernest, E.G., M.J. Bassett, and J.D. Kelly. 2005. A spontaneous mutation at a seedcoat pattern locus in the dark red kidney bean Red Hawk, which changes seed from self-colored to the partially colored virgarcus pattern. HortScience.40:57-59.

Ibarra-Pérez, F.J., J. A. Acosta-Gallegos, B. Cazares-Enriquez, R. Rosales-Serna, and J.D. Kelly. 2005. Registration of Flor de Mayo 2000 common bean. Crop Sci.45: 2657.

Kelly, J.D., G.L. Hosfield, E.G. Ernest, M. Uebersax, G.V. Varner, and J. Taylor. 2005. Redcoat Soldier Bean. HortScience 40:263-264.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2005. Registration of Condor black bean. Crop Sci. 45:795-796

Lee, C.D., K. A. Renner, D. Penner, R. Hammerschmidt, and J.D. Kelly. 2005. Glyphosate-resistant soybean management system effect on sclerotinia stem root. Weed Technol.19:580-588.

Mukeshimana, G., A. Pañeda, C. Rodriguez, J.J. Ferreira, R. Giraldez, and J.D. Kelly. 2005. Markers linked to the bc-3 gene conditioning resistance to bean common mosaic potyviruses in common bean. Euphytica 144:291-299.

Román-Avilés, B., and J.D. Kelly. 2005. Identification of quantitative trait loci conditioning resistance to Fusarium root rot in common bean. Crop Sci. 45:1881-1890.

2004
Acosta-Gallejos, J.A., F.J. Ibarra-Perez, B. Cazares-Enriqez, A. Castillo-Rosales, R. Rosales-Serna, J. D. Kelly and S.P. Singh. 2004. Registration of Negro Vizcaya shiny black bean. Crop Sci. 44:1866-1867.

Frahm, M.A., J.C. Rosas, N. Mayek-Pérez, E. López-Salinas, J.A. Acosta-Gallegos, J.D. Kelly. 2004. Breeding Beans for Resistance to Terminal Drought in the Lowland Tropics. Euphytica 136: 223-232.

Hosfield, G.L., G.V. Varner, M.A. Uebersax, and J.D. Kelly. 2004. Registration of Merlot small red bean. Crop Sci. 44: 351-352.

Kelly, J.D. 2004. Advances in Common Bean Improvement: Some Case Histories with Broader Applications. Acta Hort. (ISHS) 637:99-122. http://www.actahort.org/books/637/637_11.htm .

Kelly, J.D. and V. A. Vallejo. 2004. A comprehensive review of the major genes conditioning resistance to anthracnose in common bean. HortScience 39(6):1196-1207.

Melotto, M., M.F. Coelho, A. Pedrosa-Harand, J.D. Kelly, and L.E.A. Camargo. 2004. The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance–related genes. Theor. Appl. Genet.109:690-699.

Román-Avilés, B., S.S. Snapp, and J.D. Kelly. 2004. Assessing root traits associated with root rot resistance in common bean. Field Crops Res. 86:147-156.

Rosales-Serna, R., J. Kohashi-Shibata, J.A. Acosta-Gallejos, C. Trejo-López, J. Ortiz-Cereceres, and J. D. Kelly. 2004. Biomass distribution, maturity acceleration and yield in drought-stressed common bean cultivars. Field Crops Res. 85:203-211.

2003
Beaver, J.S. Rosas, J.C., Myers, J., Acosta, J., Kelly, J.D., Nchimbi-Msolla, S., Misangu, R., Bokosi, J., Temple, S., Coyne, D.P. 2003. Contributions of the Bean/Cowpea CRSP to cultivar and germplasm development in common bean. Field Crops Res. 82:87-102.

Castellanos-Ramos, J.Z., H. Guzmán-Maldonado, J.D Kelly, and J.A. Acosta-Gallegos. 2003. Registration of Flor de Junio Marcela Common Bean. Crop Sci. 43:1121

Frahm, M.A., J.C. Rosas, N. Mayek-Pérez, E. López-Salinas, J.A. Acosta-Gallegos, J.D. Kelly. 2003. Resistencia a sequía terminal en frijol negro tropical. Agronomia Mesoamericana 14:143-150.

Kelly, J.D., P. Gepts, P.N. Miklas, and D.P. Coyne. 2003. Tagging and mapping of genes and QTL and molecular marker-assisted selection for traits of economic importance in bean and cowpea. Field Crops Res. 82:135-154.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, M. Ender and J. Taylor. 2003. Registration of Seahawk navy bean. Crop Sci. 43:2307-2308.

Kolkman, J.M. and J.D. Kelly. 2003. QTL conferring resistance and avoidance to white mold (Sclerotinia sclerotiorum) in common bean (Phaseolus vulgaris). Crop Sci 43:539-548.

de Mejía, E.G., S.H. Guzmán-Maldonado, J.A. Acosta-Gallegos, R. Reynoso-Camacho, E. Ramírez-Rodríguez, J.L. Pons-Hernández, M.M. González-Chavira, J.Z. Castellanos, and J.D. Kelly. 2003. Effect of cultivar and growing location on the trypsin inhibitors, tannin, and lectins of common beans (Phaseolus vulgaris L.) grown in the semiarid highlands of Mexico. J Agric. Food Chem. 51:5962-5966.

Miklas, P.N., J.D Kelly, and S.P. Singh. 2003. Registration of anthracnose-resistant pinto bean germplasm line USPT-ANT-1. Crop Sci. 43:1889-1890.

Snapp, S., W. Kirk, B. Román-Avilés, and J. Kelly. 2003. Root traits play a role in integrated management of Fusarium root rot in snap beans. HortScience 38:187-191.

2002
Kolkman, J.M. and J.D. Kelly. 2002. Agronomic traits affecting resistance to white mold in common bean Crop Sci. 42:693-699.

Miklas, P.N., and J. D. Kelly. 2002. Registration of two cranberry bean germplasm lines resistant to bean common mosaic and necrosis potyviruses: USCR-7 and USCR-9. Crop Sci. 42:673-674.

Miklas, P.N., A.N. Hang, J. D. Kelly, C.A. Strausbaugh, and R.L. Forster. 2002. Registration of three kidney bean germplasm lines resistant to bean common mosaic and necrosis potyviruses: USLK-2 Light Red Kidney, USDA-4 Dark Red Kidney, and USWK-6 White Kidney. Crop Sci. 42:674-675.

Posa-Macalincag, M.C.T., G.L. Hosfield, K.F. Grafton, M.A. Uebersax, and J.D. Kelly. 2002. Quantitative trait loci (QTL) analysis of canning quality traits in kidney bean (Phaseolus vulgaris L.). J. Amer. Soc. Hort. Sci. 127: 608-615.

2001
Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, B. Cazares-Enriqez, P. Fernandez-Hernandez, A. Castillo-Rosales, and J.D.Kelly. 2001.Registration of Bayacora Pinto Bean. Crop Sci. 41:1645-1646.

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, A. Castillo-Rosales, and J. D. Kelly. 2001. Registration of Negro Sahuatoba opaque black bean. Crop Sci. 41: 1646-1647.

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, A. Castillo-Rosales, B. Cazares-Enriquez, P. Fernandez-H., and J. D. Kelly. 2001. Registration of Negro Altiplano common bean. Crop Sci. 41:1650.

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, P. Fernandez-Hernandez, A. Castillo-Rosales, and J. D. Kelly. 2001. Registration of Mestizo Pinto Bean. Crop Sci. 41: 1650-1651.

Hosfield, G.L., J.D. Kelly, and M.A. Uebersax. 2001. Erect small-red dry bean germplasm lines: ARS-R93344, ARS-R93346, ARS-R93349. HortScience 36:1341-1343.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2001. Registration of Jaguar black bean. Crop Sci. 41:1647

Melotto, M., and J.D. Kelly. 2001. Fine mapping of the Co-4 locus of common bean reveals a resistance gene candidate, COK-4, that encodes for a protein kinase. Theor Appl. Genet.103:508-517.

Schneider, K.A., K.F. Grafton, and J.D. Kelly. 2001. QTL analysis of resistance to Fusarium root rot in bean. Crop Sci. 41:535-542.

2000
Kelly, J.D. 2000. Remaking bean plant architecture for efficient production. Adv. Agron. 71:109-143.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2000. Registration of Phantom black bean. Crop Sci. 40:572.

Kolkman, J.M., and J.D. Kelly. 2000. An indirect test using oxalate to determine physiological resistance to white mold in common bean. Crop Sci. 40:281-285.

Melotto, M., and J.D. Kelly. 2000. An allelic series at the Co-1 locus conditioning resistance to anthracnose in common bean of Andean origin. Euphytica 116:143-149.

Miklas, P.M., R.C. Larsen, R. Riley, and J.D. Kelly. 2000. Potential marker-assisted selection for bc-12 resistance to bean common mosaic potyvirus in common bean. Euphytica 116:211-219.

Schneider, K.A., and J.D. Kelly. 2000. A greenhouse screening protocol for Fusarium root rot in bean (Phaseolus vulgaris L.). HortScience 35:1095-1098.

1999
Balardin, R.S., J.J. Smith, and J.D. Kelly. 1999. Ribosomal DNA polymorphism in Colletotrichum lindemuthianum. Mycol. Res.103:841-848.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Kodiak' pinto bean. Crop Sci. 39:292-293.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Chinook 2000' light red kidney bean. Crop Sci. 39:293.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Beluga' alubia bean. Crop Sci. 39:294.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Matterhorn' great northern bean. Crop Sci. 39:589-599.

1998
Balardin, R.S., and J.D. Kelly. 1998. Interaction among races of Colletotrichum lindemuthianum and diversity in Phaseolus vulgaris. J. Amer. Soc. Hort. Sci.123: 1038-1047.

Beaver, J.S., P.N. Miklas, J.D. Kelly, J.R. Steadman, and J.C. Rosas. 1998. Registration of PR9357-107 small red dry bean germplasm resistant to BCMV, BCMNV, and rust. Crop Sci. 38:1408-1409.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1998. Registration of 'Mackinac' navy bean. Crop Sci. 38:280.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, R.A. Long, and J. Taylor. 1998. Registration of 'Red Hawk' dark red kidney bean. Crop Sci. 38:280-281.

Kelly, J.D., and P.N. Miklas. 1998. The role of RAPD markers in breeding for disease resistance in common bean. Molecular Breeding 4:1-11.

Kelly, J.D., J. Kolkman, and K. Schneider. 1998. Breeding for yield in dry bean (Phaseolus vulgaris L.). Euphytica 102:343-356.

Miklas, P.N., K.F. Grafton, J.D. Kelly, H.F. Schwartz, and J.R. Steadman. 1998. Registration of our white mold resistant dry bean germplasm lines: I9365-3, I9365-5, I9365-31, and 92BG-7. Crop Sci. 38:1728.

Ramirez-Vallejo, P., and J.D. Kelly. 1998. Traits related to drought resistance in common bean. Euphytica 99:127-136.

Young, R.A., M. Melotto, R.O. Nodari, and J.D. Kelly. 1998. Marker assisted dissection of the oligogenic anthracnose resistance in common bean cultivar, G 2333. Theor. Appl. Genet. 96:87-94.

1997
Balardin, R.S., A.M. Jarosz, and J.D. Kelly. 1997. Virulence and molecular diversity in Colletotrichum lindemuthianum from South, Central and North America. Phytopathology 87:1184-1191.

Elia, F.M., G.L. Hosfield, J.D. Kelly, and M.A. Uebersax. 1997. Genetic analysis and interrelationships between traits for cooking time, water absorption, and protein and tannin content of Andean dry beans. J. Amer. Soc. Hort. Sci. 122:512-518.

Kelly, J.D. 1997. A review of varietal response to bean common mosaic potyvirus in Phaseolus vulgaris. Plant Varieties & Seeds 10:1-6.

Schneider, K.A., R. Rosales-Serna, F. Ibarra-Perez, B. Cazares-Enriquez, J. A. Acosta-Gallegos, P. Ramirez-Vallejo, N. Wassimi, and J.D. Kelly. 1997. Improving common bean performance under drought stress. Crop Sci. 37:43-50.

Schneider, K.A., M.E. Brothers, and J.D. Kelly. 1997. Marker assisted selection to improve drought resistance in common bean. Crop Sci. 37:51-60.

Walters, K.J., G.L. Hosfield, M.A. Uebersax, and J.D. Kelly. 1997. Navy bean canning quality: correlations, heritability estimates and randomly amplified polymorphic DNA markers associated with component traits. J. Amer. Soc. Hort. Sci. 122:338-343.

Young, R.A., and J.D. Kelly. 1997. RAPD markers linked to three major anthracnose resistance genes in common bean. Crop Sci. 37:940-946.

1996
Balardin, R.S. and J.D. Kelly. 1996. Identification of race 65-epsilon of bean anthracnose (Colletotrichum lindemuthianum) in Michigan. Plant Dis. 80:712.

Melotto, M., L. Afanador, and J.D. Kelly. 1996. Development of a SCAR marker linked to the I gene in common bean. Genome 39:1216-1219.

Miklas, P.N., L. Afanador, and J.D. Kelly. 1996. Recombination-facilitated RAPD marker-assisted selection for disease resistance in common bean. Crop Sci. 36:86-90.

Young, R.A. and J.D. Kelly. 1996. RAPD markers flanking the Are gene for anthracnose resistance in common bean. J. Amer. Soc. Hort. Sci. 121:37-41.

Young, R.A. and J.D. Kelly. 1996. Characterization of the genetic resistance to Colletotrichum lindemuthianum in common bean differential cultivars. Plant Dis. 80:650-654.

1995
Ali, M., L.O. Copeland, S.G. Elias, and J.D. Kelly. 1995. Relationship between genetic distance and heterosis for yield and morphological traits in winter canola (Brassica napus L.) Theor. Appl. Genet. 91:118-121.

Bauer, T.A., Renner, K.A., Penner, D., and Kelly, J.D. 1995. Pinto bean (Phaseolus vulgaris) varietal tolerance to Imazethapyr. Weed Science 43: 417-424.

Castellanos J.V., H. Guzman-Maldonado, J. Acosta-Gallegos and J.D. Kelly. 1995. Effect of hardshell on cooking time of common beans grown in the semiarid highlands of Mexico. J. Sci. Food Agric. 69:437-443.

Kelly, J.D. 1995. Use of Random Amplified Polymorphic DNA markers in breeding for major gene resistance to plant pathogens. HortScience 30:461-465.

Kelly, J.D., L. Afanador, and S.D. Haley. 1995. Pyramiding genes for resistance to Bean Common Mosaic Virus. Euphytica 82:207-212.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, L.K. Afanador, and J. Taylor. 1995. Registration of 'Newport' navy bean. Crop Sci. 35:1710-1711.

Hosfield, G.L., J.D. Kelly, M.J. Silbernagel, J.R. Stavely, M.W. Adams, M.A. Uebersax, and G. V. Varner. 1995. Eight small-red dry bean germplasm lines with upright architecture, narrow profile, and short vine growth habit. HortScience 30:1479-1482.

1994
Beaver, J.S. and J.D. Kelly. 1994. Comparison of selection methods for dry bean populations derived from crosses between gene pools. Crop Sci. 34:34-37.

Haley, S.D., P.N. Miklas, L. Afanador, and J.D. Kelly. 1994. Random Amplified Polymorphic DNA (RAPD) marker variability between and within gene pools of common bean. J. Amer. Soc. Hort. Sci. 119:122-125.

Haley, S.D., L.K. Afanador, P.N. Miklas, J.R. Stavely, and J.D. Kelly. 1994. Heterogeneous inbred populations are useful as sources of near-isogenic lines from RAPD marker localization. Theor. Appl. Genet. 88:337-342.

Haley, S.D., L.K. Afanador, and J.D. Kelly. 1994. Selection for monogenic resistance traits with coupling- and repulsion-phase RAPD markers. Crop Sci. 34:1061-1066.

Haley, S.D., L. Afanador, and J.D. Kelly. 1994. Identification and application of a Random Amplified Polymorphic DNA marker for the I gene (Potyvirus resistance) in common bean. Phytopathology 84:157-160.

Kelly, J.D., L. Afanador, S.D. Haley, P. Miklas. 1994. Uso de marcadores moleculares en el mejoramiento del frijol. Revista Agronomica Mesoamericana 5:1-7.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, M.E. Brothers, and J. Taylor. 1994. Registration of 'Huron' navy bean. Crop Sci. 34:1408-1409.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, S.D. Haley, and J. Taylor. 1994. Registration of 'Raven' black bean. Crop Sci. 34:1406-1407.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, R.A. Long, and J. Taylor. 1994. Registration of 'Isles' dark red kidney bean. Crop Sci. 34:1407-1408.

Kelly J.D., L. Afanador and L.S. Cameron. 1994. New races of Colletotrichum lindemuthianum in Michigan and implications in dry bean resistance breeding. Plant Disease 78:892-894.

Stavely, J.R., J.D. Kelly and K.F. Grafton. 1994. BelMiDak-rust-resistant navy dry bean germplasm lines. HortScience 29:709-711.

1993
Brothers, M.E. and Kelly, J.D. 1993. Allozyme evaluation of upright common bean genotypes. Euphytica 67:65-70.

Brothers, M.E. and J.D. Kelly. 1993. Interrelationship of plant architecture and yield components in the pinto bean ideotype. Crop Sci. 33:1234-1238.

Haley, S.D., Miklas, P.N., Stavely, J.R., Byrum, J., and J.D. Kelly. 1993. Identification of RAPD markers linked to a major rust resistance gene block in common bean. Theor. Appl. Gent. 86:505-512.

Miklas, P.N., Stavely, J.R., and J.D. Kelly. 1993. Identification and potential use of a molecular marker for rust resistance in common bean. Theor. Appl. Genet. 85:745-749.

1992
Kelly, J.D., Hosfield, G.L., Varner, G.V., Uebersax, M.A., Miklas, P.N., and Taylor, J. 1992. Registration of 'Alpine' great northern bean. Crop Sci. 32:1509.

Kelly, J.D., Hosfield, G.L., Varner, G.V., Uebersax, M.A., Wassimi, N., and Taylor, J. 1992. Registration of 'Aztec' pinto bean. Crop Sci. 32:1508.

Kelly, J.D., Adams, M.S., Saettler, A.W., Hosfield, G.L., Varner, G.V., Uebersax, M.A., Ghaderi, A. and Taylor, J. 1992. Registration of 'Chinook' Light red kidney bean. Crop Sci. 32:492-493.

Nodari, R.O., Koinange, E.M.K., J.D. Kelly. and Gepts, P. 1992. Towards an integrated linkage map of common bean. I Development of genomic DNA probes and levels of restriction fragment length polymorphism. Theor. Appl. Genet. 84:186-192.

Acquaah, G., Adams, M.W., and J.D. Kelly. 1992. A factor analysis of plant variables associated with architecture and seed size in dry bean. Euphytica 60:171-177.

1991
Acquaah, G., Adams, M.W. and J.D.Kelly. 1991. Identification of effective indicators of erect plant architecture in dry beans. Crop Sci. 31:261-264

1990
Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Varner, G.V., Uebersax, M.A., and Taylor, J. 1990. Registration of 'Sierra' pinto bean. Crop Sci. 30:745‑746.

Ghaderi, A., J.D. Kelly, Adams, M.W., Saettler, A.W., Hosfield, G.L., Varner, G.V., Uebersax, M.A., and Taylor, J. 1990. Registration of 'Blackhawk' tropical black bean. Crop Sci. 30:744‑745.

1989
Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Varner, G.V., Beaver, J.S., and Uebersax, M.A. 1989. Registration of 'Mayflower' navy bean. Crop Sci. 29:1571.

Beaver, J. S. and J.D. Kelly. 1989. Yield compensation of bean genotypes grown in hill-plots. HortScience 24:137‑138.

1987
Kelly, J.D. and Adams, M.W. 1987. Phenotypic recurrent selection in ideotype breeding of pinto beans. Euphytica 36:69‑80.

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Uebersax, M. and Ghaderi, A. 1987. Registration of 'Domino' and 'Black Magic' tropical black beans. Crop Sci. 27:363.

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Uebersax, M. and Ghaderi, A. 1987. Registration of 'Isabella' light red kidney bean. Crop Sci. 27:363‑364.

Kelly, J.D., Adams, M.W. and Varner, G.V. 1987. Yield stability of determinate and indeterminate dry bean cultivars. Theor. Appl. Genet. 74:516‑521.

1986
Al‑Soboh, G., Srivastava, A.K., Burkhardt, T.H. and J.D. Kelly. 1986. A mixed‑integer linear programming (MILP) machinery selection model for navy bean production systems. Transactions of the ASAE 29:81‑84.

Adams, M.W., Saettler, A.W., Hosfield, G.L., Ghaderi, A., J.D. Kelly, and Uebersax, M.A. 1986. Registration of 'Swan Valley' and 'Neptune' navy beans. Crop Sci. 26:1080‑1081.

1985
Freytag, G.F., J.D. Kelly, Adams, M.W. Lopez Rosa, J., Beaver J. and Echavez Badel, R. 1985. Registration of two navy bean breeding lines, L226‑10 and L227‑1. Crop Sci. 25:714.

1984
Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L. and Ghaderi, A. 1984. Registration of C‑20 navy bean. Crop Sci. 24:822.

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L. and Ghaderi, A. 1984. Registration of Laker navy bean. Crop Sci. 24:1210.

Ghaderi, A., Johanson, A.G., Adams, M.W. and J.D. Kelly. 1984. A computerized system for storage, processing and retrieval of information for breeding of dry edible beans (Phaseolus vulgaris L.) HortScience 19:345‑348.

1975
Kelly, J.D. and Bliss, F.A. 1975. Heritability estimates of percentage seed protein and available methionine and correlation with yield in dry beans. Crop Sci. 15:753‑757.

Kelly, J.D. and Bliss, F.A. 1975. Quality factors affecting the nutritive value of bean seed protein. Crop Sci. 15:757‑760

BOOK CHAPTERS

Kelly, J.D. 2018. Developing improved varieties of common bean, 2:3-17. In: Achieving sustainable cultivation of grain legumes. Vol. 2: Improving cultivation of particular grain legumes. Editors: Sivasankar S., Bergvinson D., Gaur P., Agrawal S.K., Beebe S., Tamò M.Burleigh Dodds Science Publishing, Cambridge UK, pp. 376.
 
Kelly, J.D., and N. Bornowski. 2018. Marker assisted breeding for economic traits in common bean.  In: Biotechnologies of Crop Improvement: Volume 3: Genomic Approaches. Editors: S. Singh Gosal, S. Hussain Wani. Springer
 
Musoni, A.,  J. Kayumba, L. Butare, F. Mukamuhirwa, E. Murwanashyaka, D. Mukankubana, J.D. Kelly, J. Ininda, and D. Gahakwa. 2014. Innovations to overcome staking challenges to growing climbing beans by smallholders in Rwanda. p. 129-136. In: Challenges and Opportunities for Agricultural Intensification of the Humid Highland Systems of Sub-Saharan Africa. Editors:  B. Vanlauwe et al., Springer International Publishing Switzerland doi 10.1007/978-3-319-07662-1_11
 
Vandemark, G.J., M.A. Brick, J.M. Osorno, J.D. Kelly, and C.A. Urrea. 2014. Edible grain legumes. In: Yield gains in major U.S. field crops. Editors: S. Smith, B. Diers, J. Specht, and B. Carver, CSSA Spec. Publ. 33. CSSA, Madison, WI. p. 87-123.  doi:10.2135/cssaspecpub33.c5

Ferreira, J.J., A. Campa, and J.D. Kelly. 2013. Organization of Genes Conferring Resistance to Anthracnose in Common Bean, pp.?? In: Genomics Applications in Plant Breeding, Roberto Tuberosa, Rajeev Varshney (eds.), Wiley-Blackwell Pubs.

Kelly, J.D. and K.A. Cichy. 2012. Dry Bean Breeding and Production Technologies, pp. 23-54. In: Common Beans and Pulses: Production, Processing, and Nutrition. Muhamad Siddiq, Mark A. Uebersax(eds.), Wiley-Blackwell Publishing Co. Oxford U.K.

Roman-Avilés, B., J.M. Lewis and J.D. Kelly. 2011. Fusarium Genetic Control: A Long Term Strategy, pp. 65-108. In: Control of Fusarium Diseases, Fernando M. Alves-Santos, Julio J. Diez (eds.), ISBN: 978-81-308-0470-5.

Kelly, J.D., and V.A. Vallejo. 2005. QTL analysis of multigenic disease resistance in plant breeding. p. 21-48. In S. Tuzun and E. Bent (eds.), Multigenic and Induced Systemic Resistance in Plants. Springer, New York.

Kelly, J.D. 2000. Remaking bean plant architecture for efficient production. Advances in Agronomy 71:109-143.

Melotto, M., R.S. Balardin and J.D. Kelly. 2000. Host-pathogen interaction and variability of Colletotrichum lindemuthianum. In: D. Prusky, S. Freeman, and M.B. Dickman (eds.), pp 346-361. APS press St. Paul, MN.

Kelly, J.D., K.A. Schneider, and J.M. Kolkman. 1999. Breeding to improve yield. In: Developments in Plant Breeding Vol. 7. S.P. Singh (ed.), Common bean improvement in the Twenty First Century. Kluwer Acad. Pub. Dordrecht, The Netherlands.

Kelly, J.D., and P.N. Miklas. 1999. Marker-assisted selection. In: Developments in Plant Breeding Vol. 7. S.P. Singh (ed.), Common bean improvement in the Twenty First Century. Kluwer Acad. Pub. Dordrecht, The Netherlands.

 

Non-Refereed Publications

2017

Bornowski, N., F. A. Mendoza, and J. D. Kelly. 2017. Mapping and predicting color retention and other quality traits in black bean populations. Ann. Rep. Bean Improv. Coop. 60:151-152.
 
 Vandemark, G.J., M. A. Brick, J. D. Kelly, J.M. Osorno, and C.A. Urrea. 2017. Yield gains in dry beans in the U.S. Ann. Rep. Bean Improv. Coop. 60: 183-184.  

2016

Acosta-Gallegos, J.A., Y. Jiménez Hernández, V. Montero Tavera, M. A. Martínez Gamiño, M. D. Herrera, J. L. Anaya López, and J.D. Kelly. 2016. Release of pinto Raramuri dry bean for the semi-arid highlands of Central Mexico. Ann. Rep. Bean Improv. Coop. 59:253.
 
Chilvers, M.I., J.L. Jacobs, A.M. Byrne, and J.D. Kelly. 2016. Screening Andean dry bean germplasm for root rot resistance. Ann. Rep. Bean Improv. Coop 59:105-106.
 
Zuiderveen, G.H., B. Padder, K. Kamfwa and J. D. Kelly. 2016. Mapping the Co-1 locus conditioning anthracnose resistance in common bean. Ann. Rep. Bean Improv. Coop 59:17-18.

2015

Zuiderveen, G.H., K. Kamfwa and J. D. Kelly. 2015. Anthracnose resistance in Andean beans. Ann. Rep. Bean Improv. Coop. 58:9-10.

2014

dos Santos, H.M., V.Hoyos-Villegasand J.D. Kelly. 2014. Genome-wide association analysis for reaction to white mold in the BeanCAP Mesoamerican panel. Ann. Rep. Bean Improv. Coop. 57:235-236.
 
Heilig, J.A. and J.D. Kelly. 2014. QTL analysis of biological nitrogen fixation and agronomic traits in the Puebla/Zorro RIL population.  Ann. Rep. Bean Improv. Coop. 57:101-102.
Kelly, J.D. 2014. The changing face of bean breeding; past and future. Ann. Rep. Bean Improv. Coop. 57:1-2.
 
Kamfwa, K., K.A. Cichy and J.D. Kelly. 2014.  Genetic variability for nitrogen fixation in the Andean diversity panel of Phaseolus vulgaris. Ann. Rep. Bean Improv. Coop. 57:43-44.
 
Ibarra-Perez, F.J., J.G. Waines and B. Ehdaie, J. A. Heilig and J.D. Kelly. 2014. Phenotyping root and shoot traits of Zorro and Puebla 152 common bean (Phaseolus vulgaris L.) cultivars. Ann. Rep. Bean Improv. Coop. 57:107-108.

2013

Mukeshimana, G., and J.D. Kelly. 2013. Influence of basal salt sources on the regeneration of common bean.Ann. Rep. Bean Improv. Coop. 56:1-2.
 
Sousa, L.L., M.C. Gonçalves-Vidigal, A.O. Gonçalves, P.S. Vidigal Filho, H. Awale, and J.D. Kelly. 2013. Molecular mapping of the anthracnose resistance Co-15 gene in the common cultivar Corinthiano. Ann. Rep. Bean Improv. Coop. 56:45-46.

2012

Acosta-Gallegos, J., and J.D. Kelly. 2012. Strategies to improve adaptation of common bean to drought. Ann. Rept. Bean Improv. Coop. 55:7-8.
 
Brisco, E.I., T. Porch, and J.D. Kelly. 2012. Influence of leaf color in a dry bean mapping population on Empoasca sp. Populations and host plant resistance. Ann. Rept. Bean Improv. Coop. 55:83-84.
 
Heilig, J. and J.D. Kelly. 2012. Utilizing growth pouches to screen black and navy dry bean breeding lines for early nodulation. Ann. Rept. Bean Improv. Coop. 55:67-68.
 
Miklas, P.N., J.D. Kelly, J.R. Steadman and S.McCoy. 2012. Release of partial white mold resistant pinto USPT-WM-12. Ann. Rept. Bean Improv. Coop. 55:291-292.
 
Mkwaila, W. and J.D. Kelly. 2012. Identification and validation of QTL for resistance to white mold in two pinto bean RIL populations. Ann. Rept. Bean Improv. Coop. 55:157-158.
 
Mukeshimana, G., L. Butare, S. Beebe, M.W. Blair and J.D. Kelly. 2012. Phenotypic evaluation of dry bean RIL populations for drought resistance in Rwanda. Ann. Rept. Bean Improv. Coop. 55:111-112.
 
Osorno, J.M., M.R. Miles, J. Weyers, J. Prendergast, J.D. Kelly, G. Varner, M. Siddiq, C.A. Urrea, K. Cichy and A.M. Linares. 2012. Genetic and environmental effects on canning quality of pinto and navy bean cultivars commonly grown in central US. Ann. Rept. Bean Improv. Coop. 55:77-78
 
Sousa, L.L., M.C. Goncalves-Vidigal, A.S. Cruz, P.S. Vidigal Filho, V.A. Vallejo and J.D. Kelly. 2012. Genetic mapping of the Co-52allele for resistance to Colletotrichum lindemuthianumin MSU 7-1 line. Ann. Rept. Bean Improv. Coop. 55:109-110

2011

Abawi, G.S., T.G. Porch, and J. D. Kelly. 2011. Field and greenhouse evaluation of bean germplasm for root rot and other diseases in New York, 2010. Annu. Rep. Bean Improv. Coop. 54:142-143.
 
Brisco, E.I., T. G. Porch, and J.D. Kelly.2011. Comparison of choice versus no-choice tests of a dry bean IBL population for resistance to potato leafhopper. Annu. Rep. Bean Improv. Coop. 54:88-89.
 
Mkwaila, W., and J. D. Kelly. 2011. Heritability estimates and phenotypic correlations for white mold resistance and agronomic traits in pinto bean. Annu. Rep. Bean Improv. Coop. 54:134-135.

2010

Brisco, E.I., T. Porch, and J.D. Kelly. Kelly. Phenotypic evaluation of a dry bean RIL population for resistance to potato leafhopper. Annu. Rep. Bean Improv. Coop. 53:84-85.

Heilig, J., and J. D. Kelly. 2010. Screening bean genotypes for enhanced N fixing ability.Annu. Rep. Bean Improv. Coop. 53:76-77.

Pastor-Corrales, M.A., J. Rayapati, J. M. Osorno, J.D. Kelly, E.M. Wright, M. A. Brick, S. G. Markell, and R. S. Goswami. 2010. Reaction of common bean cultivars to two new races of rust pathogen from Michigan and North Dakota. Annu. Rep. Bean Improv. Coop. 53:66-67.

Pastor-Corrales, M.A., E.M. Wright, S.G. Markell, H. E. Awale, J. D. Kelly, J.G. Jordahl, R.S. Lamppa, F.M. Mathew, J. M. Osorno, and R.S. Goswami. 2010. Comparing the virulence of new races of the common bean rust pathogen from Michigan and North Dakota.

2009

Madubanya, L.A., M.A. Liebenberg, C.M.S. Mienie and J.D. Kelly. 2009. Mapping rust resistance genes on the distal portion of bean chromosome 11. Annu. Rep. Bean Improv. Coop. 52:78-79.

Liebenberg, M.A., L.A. Madubanya, C.M.S. Mienie and J.D. Kelly. 2009. A closer look at the resistance gene cluster on common bean chromosome 11. Annu. Rep. Bean Improv. Coop. 52:80-81.

2008

Awale, H., S. M. Ismail, V.A. Vallejo, and J.D. Kelly. 2008. SQ4 SCAR marker linked to the Co-2 gene on B11 appears to be linked to the Ur-11 gene. Annu. Rep. Bean Improv. Coop 51:174-175.

Kelly, J.D., G.V. Varner, B. Long, and P. O’Boyle. 2008. Release of ‘Zorro’ Black Bean. Annu. Rep. Bean Improv. Coop 51:286-287.

Kelly, J.D., G.V. Varner, and B. Long. 2008. Release of Santa Fe Pinto Bean. Annu. Rep. Bean Improv. Coop 51:288-289.

Kelly, J.D., G.V. Varner, B. Long, and B. Roman. 2008. Release of ‘Fuji’ Otebo Bean. Annu. Rep. Bean Improv. Coop 51:290.

Terpstra, K.A., and J.D. Kelly. 2008. QTL Analysis of white mold resistance in an inbred backcross mapping population derived from a wild Mexican bean. Annu. Rep. Bean Improv. Coop 51:220-221.

Wright, E.W., and J.D. Kelly. 2008. Color loss in two black bean populations. Annu. Rep. Bean Improv. Coop 51:138-139.

Wright, E.W., H.E. Awale, and J.D. Kelly. 2008. Use of TRAP markers to map resistance to a new race of common bean rust in Michigan. Annu. Rep. Bean Improv. Coop 51:210-211.

2007
Acosta-Gallegos, J.A. B. Aguilar-Garzón, R. Rodríguez-Guerra, M. Mendoza-Hernández, H. Guzman-Maldonado, and J.D. Kelly. 2007. Seed yield of black seeded lines introgressed with wild Phaseolus vulgaris. Annu. Rept. Bean Improv. Coop. 50:23-24.

Awale, H., E. Falconi, J.C. Villatoro and J.D. Kelly. 2007. Variability in Colletotrichum lindemuthianum from Ecuador and Guatemala. Annu. Rept. Bean Improv. Coop. 50:85-86.

2006

Armenia, A.R.O., R. Allison, and J.D. Kelly. 2006. Dry bean transformation to enhance white mold resistance. Annu. Rept. Bean Improv. Coop. 49:85-86.

Falconi, E., J. Pinzon and J. D. Kelly. 2006. Development of drought-resistant genotypes for Ecuador. Annu. Rept. Bean Improv. Coop. 49:89-90.

Ibarra-Perez, F.J., J. A. Acosta-Gallegos, R. Navarrete-Maya, R. Zandate-Hernandez, P. Fernandez-Hernandez, and J.D. Kelly. 2006. Molecular markers used to improve the level of resistance to common bacterial blight in dry bean. Annu. Rept. Bean Improv. Coop. 49:13-14.

Navarrete-Maya, R., J. A. Acosta-Gallegos, F. J. Ibarra-Perez, R. Zandate-Hernandez, P. Fernandez-Hernandez, J. Navarrete-Maya, and J.D. Kelly. 2006. Distribution and pathogenicity of bean common bacterial blight in the semiarid highlands of Mexico. Annu. Rept. Bean Improv. Coop. 49:105-106.

Navarrete-Maya, R., J. A. Acosta-Gallegos, F. J. Ibarra-Perez, J. Navarrete-Maya, F. M. Mendoza-Hernandez, and J.D. Kelly. 2006. Reaction of 36 common bean cultivars inoculated with four Xanthomonas campestris pv. phaseoli isolates. Annu. Rept. Bean Improv. Coop. 49:215-216.

Terpstra, K.A., and J.D. Kelly. 2006. Preliminary QTL analysis for white mold resistance in a black bean x wild Mexican bean inbred backcross mapping population. Annu. Rept. Bean Improv. Coop. 49: 103-104.

Terpstra, K.A., E.M. Wright, and J.D. Kelly. 2006. Protocol for visualizing sequence related amplified polymorphism (SRAP) and target region amplified polymorphism (TRAP) markers on agarose gels. Annu. Rept. Bean Improv. Coop. 49: 191-192.

2005
Ibarra-Perez, F.J.,and J. D. Kelly. 2005. Molecular markers used to validate reaction of elite bean breeding lines to common bacterial blight. Annu. Rept. Bean Improv. Coop. 48: 98-99.

Ibarra-Perez, F.J., J. Acosta-Gallegos, R. Navarrete-Maya, P. Fernandez-Hernandez, R. Zanadate, and J.D. Kelly. 2005. Use of SCAR markers as a tool to verify presence of CBB resistance QTL in breeding populations of common bean. Annu. Rept. Bean Improv. Coop. 48:100-101.

Miklas, P., K. Grafton, D. Hauf, and J.D. Kelly. 2005. Release of partial white mold resistant pinto bean germplasm lines USPT-WM-1 and USPT-WM-2. Annu. Rept. Bean Improv. Coop. 48:190-191.

Padilla-Ramírez, J.S., J.A. Acosta-Gallegos, E. Acosta-Díaz, N. Mayek-Pérez, and J.D. Kelly. 2005. Partitioning and partitioning rate to seed yield in drought-stressed and non stressed dry bean genotypes. Annu. Rept. Bean Improv. Coop. 48:152-153.

Pastor-Corrales, M.A., J.R. Stavely, J.D. Kelly, J. Steadman, D.P. Coyne, and D.T. Lindgren. 2005. Release of BELMINEB-RMR-8, -9, -10, -11, -12, and -13, Erect, Short Vine, Rust and Mosaic Resistant Great Northern Bean Germplasm Lines. Annu. Rept. Bean Improv. Coop. 48:194-196.

Vallejo, V., and J.D. Kelly. 2005. Unexpected resistance genes for anthracnose uncovered. Annu. Rept. Bean Improv. Coop. 48:74-75.

Vallejo, V. and J.D. Kelly. 2005. Initial dissection of the anthracnose resistance in the landrace cultivar G 2338.Annu. Rept. Bean Improv. Coop. 48: 76-77.

2004

Acosta-Gallegos, J.A.,S. Padilla Ramírez, G. Esquivel-Esquivel, E. López-Salinas, B. Aguilar-Garzón, N. Mayek-Pérez and J.D. Kelly. 2004. Seed yield of diverse bean cultivars grown in three regions of Mexico. Annu. Rept. Bean Improv. Coop. 47:293-294.

Brick, M.A., J.B. Ogg, H.F. Schwartz, P.F. Byrne and J.D. Kelly. 2004. Resistance to multiple races of Fusarium Wilt in common bean. Annu. Rept. Bean Improv. Coop. 47:131-132.

Ernest, E.G., M.J. Bassett, and J.D. Kelly. 2004. Elucidation of the Genotype of a Virgarcus Seed Coat Pattern Mutant of Red Hawk Dark Red Kidney Bean. Annu. Rept. Bean Improv. Coop. 47:95-96.

Ernest, E.G., and J.D. Kelly. 2004. The Mesoamerican anthracnose resistance gene, Co-42, does not confer resistancein certain Andean genetic backgrounds. Annu. Rept. Bean Improv. Coop. 47:245-246.

Gonçalves-Vidigal, M.C., and J.D. Kelly. 2004. RAPD Marker linked to Co-15 anthracnose resistance gene in Widusa. Annu. Rept. Bean Improv. Coop. 47:135-136.

Gonçalves-Vidigal, M.C., and J.D. Kelly. 2004. Inheritance of anthracnose resistance in the common bean cultivar Widusa. Annu. Rept. Bean Improv. Coop. 47:55-56

Kelly, J.D., and P.N. Miklas. 2004. Germplasm enhancement in the United States:The Tropical Connection. Annu. Rept. Bean Improv. Coop. 47:35-36.

O’Boyle, P.D., and J.D. Kelly. 2004. Use of Marker-Assisted Selection to breed for resistance to common bacterial blight in dry bean. Annu. Rept. Bean Improv. Coop. 47:107-108.

Padilla-Ramírez, J.S., E. Acosta-Díaz, R. Gaytán-Bautista, J.A. Acosta-Gallegos, G. Esquivel-Esquivel, N. Mayek-Pérez and J.D. Kelly. 2004. Rainfall pattern and seed yield of dry bean in the semiarid highlands of Mexico. Annu. Rept. Bean Improv. Coop. 47:291-292.

Román Avilés, B., S. S. Snapp, J.D. Kelly. 2004. Evaluation of Bean Classes for Root Traits Differences Associated with Root Rot Resistance Annu. Rept. Bean Improv. Coop. 47:59-60.

Steadman, J.R., L.K. Otto-Hanson, K. Powers, C. Kurowski, R. Mainz, J. Kelly, P. Griffiths, K.Grafton , J. Myers, P. Miklas and H. Schwartz. 2004. Identification of partial resistance to Sclerotinia sclerotiorum in common bean at multiple locations. Annu. Rept. Bean Improv. Coop. 47:281-282.

2003

Ender, M., J.M. Kolkman and J.D. Kelly. 2003. Use of Inbred Backcross Method to Introduce Resistance to White Mold from Exotic Germplasm into Common Bean. Annu. Rept. Bean Improv. Coop. 46:13-14.

Frahm, M.A., E.F. Foster and J.D. Kelly. 2003. Indirect Screening Techniques for Drought Resistance in Dry Beans. Annu. Rept. Bean Improv. Coop. 46:87-88.

Gonçalves-Vidigal, M.C., Veronica Vallejo and J.D. Kelly. 2003. Characterization of the Anthracnose Resistance in the Differential Cultivar Widusa. Annu. Rept. Bean Improv. Coop. 46:175-176.

Hosfield, G.L., J.D. Kelly, J. Taylor and G.V. Varner. 2003. Notice of Naming and Release of Merlot, a New, Upright, Disease Resistant Small-Red Bean (Phaseolus vulgaris, L.) Cultivar. Annu. Rept. Bean Improv. Coop. 46:243-244.

Kelly, J.D., M. Ender, J. Taylor, G.L. Hosfield, M.A. Uebersax and G.V. Varner. 2003 Notice of Naming and Release of Seahawk, a New Mid Season, Upright, White Mold Tolerant Navy Bean Cultivar for Michigan and the Great Lakes Region. Annu. Rept. Bean Improv. Coop. 46:245-246.

Mukeshimana, G. and J.D. Kelly. 2003. Evaluation of Rwandan Varieties for Disease Resistance. Annu. Rept. Bean Improv. Coop. 46:145-146.

Padilla-Ramírez, J.S., R. Ochoa-Márquez, E. Acosta-Díaz, J.A. Acosta-Gallegos, N. Mayek-Pérez and J.D. Kelly. 2003. Grain Yield of Early and Late Dry Bean Genotypes Under Rainfed Conditions in Aguascalientes, Mexico. Annu. Rept. Bean Improv. Coop. 46:89-90.

Rosales-Serna, Rigoberto, Josué Kohashi-Shibata, Jorge A. Acosta-Gallegos, Carlos Trejo-López, Joaquín Ortiz-Cereceres and J.D. Kelly. 2003. Biomass Allocation and Yield in Drought-Stressed Common Bean under Differential Rhizosphere Confinement. Annu. Rept. Bean Improv. Coop. 46:75-76.

Rosales-Serna, Rigoberto, Josué Kohashi-Shibata, Jorge A. Acosta-Gallegos, Carlos Trejo-López, Joaquín Ortiz-Cereceres and J.D. Kelly. 2003. Plant Water Status in Drought-Stressed Common Bean under Differential Rhizosphere Confinement. Annu. Rept. Bean Improv. Coop. 46:77-78.

Teixeira Caixeta, Eveline, Aluízio Borém and J.D. Kelly. 2003. Microsatellite Markers for Common Bean. Annu. Rept. Bean Improv. Coop. 46:157-158.

Vallejo, V.A., H.E. Awale and J.D. Kelly. 2003. Characterization of the Anthracnose Resistance in the Andean Bean Cultivar Jalo EEP558. Annu. Rept. Bean Improv. Coop. 46:179-180

2002

Miklas, P.N., M.A. Pastor-Corrales, G. Jung, D.P. Coyne, J.D. Kelly, P.E. McClean, and P. Gepts. 2002. Comprehensive Linkage Map Of Bean Rust Resistance Genes. Annu. Rept. Bean Improv. Coop. 45:125-126

Frahm, M.A., J.C. Rosas, and J.D. Kelly. 2002. Field resistance to Macrophomina phaseolina in black bean populations. Annu. Rept. Bean Improv. Coop. 45:148-149.

Rosales-Serna, R., J. Kohashi-Shibata, J.A. Acosta-Gallegos, C. Trejo-López, J. Ortiz-Cereceres and J.D. Kelly. 2002. Yield and phenological adjustment in four drought-stressed common bean cultivars. Annu. Rept. Bean Improv. Coop. 45:198-199.

2001

Awale, H.E., and J.D. Kelly. 2001. Development of SCAR markers linked to Co-42 gene in common bean. Annu. Rept. Bean Improv. Coop. 44:119-120.

Posa-Macalincag, M.C., G.L. Hosfield, J.D. Kelly, and K.F. Grafton. 2001. Identification of RAPD markers linked to canning quality traits in kidney bean. Annu. Rept. Bean Improv. Coop. 44:161-162.

Vallejo, V., and J.D. Kelly. 2001. Development of a SCAR markers linked to Co-5 locus in common bean. Annu. Rept. Bean Improv. Coop. 44:121-122.

2000

Acosta-Diaz, E., J.A. Acosta-Gallegos, I. Cuellar-Robles, J.D. Kelly, and R. Bernsten. 2000. Adoption of new bean cultivars for rainfed conditions in Zacatecas, Mexico. Annu. Rept. Bean Improv. Coop. 43:182-183.

Kelly, J.D. 2000. Anthracnose races present on both wild and cultivated Phaseolus vulgaris in Mexico. Annu. Rept. Bean Improv. Coop. 43:184-185.

Kelly, J.D., G.L. Hosfield, and M. Uebersax. 2000. Notice of naming and release of Jaguar, new mid-season, upright, disease resistance black bean cultivar for Michigan and the Great Lakes Region. Annu. Rept. Bean Improv. Coop. 43:222-223.

Melotto, M. V. Vallejo, H. Awale, and J.D. Kelly. 2000. Use of RAPD and AFLP analysis to tag the Co-1 gene conditioning resistance to bean anthracnose. Annu. Rept. Bean Improv. Coop. 43:84-85.

Lopez-Salinas, J.A. Acosta-Gallegos, H.E. Awale, and J.D. Kelly. 2000. An unusual outbreak of anthracnose in the lowlands of Veracruz, Mexico. Annu. Rept. Bean Improv. Coop. 43:184-185.

1999

Kelly, J.D., J. Taylor, G.L. Hosfield, M.A. Uebersax, and G.V. Varner. 1999. Notice of naming and release of Phantom black bean. Annu. Rept. Bean Improv. Coop. 42:133-134.

Kolkman, J, and J.D. Kelly. 1999. Inheritance of resistance to white mold in common bean. Annu. Rept. Bean Improv. Coop. 42:47-48.

Melotto, M., H.E. Awale, and J. D. Kelly. 1999. An allelic series at the Co-1 locus for anthracnose resistance in common bean. Annu. Rept. Bean Improv. Coop. 42:9-10.

Schneider, K., and J.D. Kelly. 1999. Heritability estimates for resistance to root rot in common bean. Annu. Rept. Bean Improv. Coop. 42:65-66.

Posa, M.C., G.L. Hosfield. J. D. Kelly and K.F. Grafton. 1999. Variability for processing quality traits in two recombinant inbred populations of kidney bean. Annu. Rept. Bean Improv. 42:127-128.

1998

Acosta-Gallegos, J. A., E. Acosta-Diaz, S. Padilla-Ramirez, E. Lopez-Salinas, R. A. Salinas-Perez, N. Mayek-Perez and J.D. Kelly. 1998. Seed yield of dry bean cultivars under drought stress. Annu. Rept. Bean Improv. Coop. 41:151-152.

Balardin, R.S., and J. D. Kelly. 1998. Molecular characterization of variability in Colletotrichum lindemuthianum. Annu. Rept. Bean Improv. Coop. 41:19-20.

Goytia-Jimenez, M. A., J. A. Acosta-Gallegos, S. Padilla-Ramirez, J. Ortiz-Cereceres and J. D. Kelly. 1998. Heritability of seed yield in common bean under irrigated and drought stressed conditions. Annu. Rept. Bean Improv. Coop. 41:149-150.

Kelly, J.D. 1998. Bean roots - A plant breeder=s perspective. Annu. Rept. Bean Improv. Coop. 41:214-215.

Kelly, J.D., J. Taylor, G.L. Hosfield, M.A. Uebersax, and G.V. Varner. 1998. Notice of naming and release of Matterhorn great northern bean. Annu. Rept. Bean Improv. Coop. 41:235-236.

Kelly, J.D., J. Taylor, G.L. Hosfield, M.A. Uebersax, and G.V. Varner. 1998. Notice of naming and release of Kodiak pinto bean. Annu. Rept. Bean Improv. Coop. 41:237-238.

Kelly, J.D., J. Taylor, G.L. Hosfield, M.A. Uebersax, and G.V. Varner. 1997. Notice of naming and release of Chinook 2000 light red kidney bean. Annu. Rept. Bean Improv. Coop. 41:239-240.

Kelly, J.D., J. Taylor, G.L. Hosfield, M.A. Uebersax, and G.V. Varner. 1997. Notice of naming and release of Beluga alubia bean. Annu. Rept. Bean Improv. Coop. 41:241-242.

Kolkman, J, and J.D. Kelly. 1998. Analysis of white mold resistance in dry bean. Annu. Rept. Bean Improv. Coop. 41:68-68.

Melotto, M., and J. D. Kelly. 1998. SCAR markers linked to major disease resistance genes in common bean. Annu. Rept. Bean Improv. Coop. 41:64-65.

Melotto, M., R.A. Young, and J. D. Kelly. 1998. Marker assisted dissection of genes conditioning resistance to anthracnose. Annu. Rept. Bean Improv. Coop. 41:9-10.

Schneider, K., J.D. Kelly, and K.F. Grafton. 1998. Evaluation and identification of root rot resistance to Fusarium solani f.sp. phaseoli in common bean. Annu. Rept. Bean Improv. Coop. 41:60-61.

1997

Acosta-Gallegos, J.A., Acosta-Diaz, E., Rosales-Serna, R. Padilla-Ramirez, S., Lopez-Salinas, E., and Kelly, J.D. 1997. Yield response of dry bean cultivars from different races under drought stress. Ann. Rep. Bean Improv. Coop. 40:75-76.

Balardin, R.S. and Kelly, J.D. 1997. Re-characterization of Colletotrichum lindemuthianum races. Ann. Rep. Bean Improv. Coop. 40:126-127.

Kelly, J.D., Taylor, J., Hosfield, G.L., Uebersax, M.A., and Varner, G.V. 1997. Notice of naming and release of Mackinac navy bean. Ann. Rep. Bean Improv. Coop. 40:147-148.

Kelly, J.D., Taylor, J., Hosfield, G.L., Uebersax, M.A., Varner, G.V., and Long, R.A. 1997. Notice of naming and release of Red Hawk dark red kidney bean. Ann. Rep. Bean Improv. Coop. 40:149-150.

Stavely, J.R, Kelly, J.D., Grafton, K.F., Mullins, C.A., Straw, A. McMillan Jr., R.T., Beaver, J.S., Miklas, P.N., Steinke, J., Steadman, J.R., Coyne, D.P., Lindgren, D.T., and Silbernagel, M.J. 1997. Rust resistant bean germplasm releases, 1994-1996. Ann. Rep. Bean Improv. Coop. 40:120-121.

Uebersax, M.A., Chung, Y.S., Feneley, M., Kelly, J.D. and Hosfield, G.L. 1997. Characterization of navy beans prepared by still and agitating thermal process. Ann. Rep. Bean Improv. Coop. 40:21-22.

Young, R.A., and Kelly, J.D. 1997. Test of allelism for the anthracnose resistance Co-1 gene. Ann. Rep. Bean Improv. Coop. 40:128-129.

1996

Balardin, R.S. and J.D. Kelly. 1996. Traditional and molecular characterization of Colletotrichum lindemuthianum isolates. Ann. Rep. Bean Improv. Coop. 39:188-189.

Hart, P. B. Shaw, D. Steffen, J. Kolkman, and J. Kelly. 1996. Evaluating dry beans for white mold resistance. Ann. Rep. Bean Improv. Coop. 39:186-187.

Kelly, J.D. 1996. Notice of the naming and release of Newport. Ann. Rep. Bean Improv. Coop. 39: 320-321.

Kelly, J.D., and R.A. Young. 1996. Proposed symbols for anthracnose resistance genes. Ann. Rep. Bean Improv. Coop. 39: 20-24.

Kelly, J.D., J.R. Stavely, and P.N. Miklas. 1996. Proposed symbols for rust resistance genes. Ann. Rep. Bean Improv. Coop. 39: 25-31.

Miklas, P.N., L. Afanador, and J.D. Kelly. 1996. Recombination-facilitated marker-assisted selection for disease resistance in common bean. Ann. Rep. Bean Improv. Coop 39:54.

Schneider, K., J. Acosta-Gallegos, F. Ibarra-Perez, and J.D. Kelly. 1996. Application of marker assisted selection to improving a quantitative trait in common bean. Ann. Rep. Bean Improv. Coop. 39:61-62.

Stavely, J.R., and J.D. Kelly. 1996. Evidence for the independence of the Ur-4 (Up-2) and Ur-6 rust resistance gene. Ann. Rep. Bean Improv. Coop. 39:302-303.

Walters, K.J., G.L. Hosfield, M.A. Uebersax, and J.D. Kelly. 1996. The genetics of canning quality in navy bean. Ann. Rep. Bean Improv. Coop. 39:114-115.

Young R.A., and J.D. Kelly. 1996. Gene pyramiding using marker assisted selection for stable resistance to bean anthracnose. Ann. Rep. Bean Improv. Coop. 39:57-58.

Young R.A., and J.D. Kelly. 1996. Is the anthracnose resistance 'A' gene the same in cultivars belonging to both bean gene pools. Ann. Rep. Bean Improv. Coop. 39:296-297.

1995

Steadman, J.R., J. Beaver, M. Boudreau, D. Coyne, J. Groth, J. Kelly, M. McMIllan, P. Miklas, M. Pastor-Corrales, H. Schwartz, J. Stavely. 1995. Progress reported at the 2nd International Bean Rust Workshop. Bean Imp. Coop. 38:1-10.

1994

Grafton K.F., Kelly, J.D., Brick, M.A., and Coyne, D.P. 1994. Evaluating dry bean breeding lines using the Midwest Regional Performance Nursery. Bean Imp. Coop. 37:91-92.

Kelly, J.D., Haley, S.D., Afanador, L., Miklas, P., and Stavely, J.R. 1994. Application of RAPD markers for disease resistance breeding in beans. Bean Imp. Coop. 37:15-16.

Kelly, J.D., Taylor, J., Hosfield, G.L., Uebersax, M.A., Varner, G.V., and Long, R.A. 1994. Notice of naming and release of Isles, a new full-season upright dark red kidney bean for Michigan and the Great Lakes region. Bean Imp. Coop. 37:249-250.

Kelly, J.D., Taylor, J., Brother, M., Hosfield, G.L., Uebersax, M.A., and Varner, G.V. 1994. Notice of naming and release of Huron, a new mid-season upright navy bean for Michigan and the Great Lakes region. Bean Imp. Coop. 37:251-252.

Kelly, J.D., Taylor, J., Haley, S.D., Hosfield, G.L., Uebersax, M.A., and Varner, G.V. 1994. Notice of naming and release of Raven, a new mid-season upright black bean for Michigan and the Great Lakes region. Bean Imp. Coop. 37:253-254.

Stavely, J.R., Kelly, J.D., Grafton, K.F., Steinke, J., Steadman, J.R., Coyne, D.P., Lindgren, D.T. and Silbernagel, M.J. 1994. Recent rust resistant bean germplasm releases. Bean Imp. Coop. 37:247-248.

Young, R.A., and Kelly, J.D. 1994. A RAPD marker for the ARE anthracnose resistance gene in beans. Bean Imp. Coop. 37:77-78.

1993

Kelly, J.D., Stavely, J.R., Miklas, P., Afanador, L., and Haley, S.D. 1993. Pyramiding Rust Resistance Genes using RAPD markers. Bean Imp. Coop. 36:166-167.

Haley, S.D., Afanador., L., and Kelly, J.D. 1993. Further optimization of random amplified polymorphic DNA (RAPD) analysis in common bean. Bean Imp. Coop. 36:12-13.

Afanador, L.K., Haley, S.D., and Kelly, J.D. 1993. Adoption of a 'mini-prep' DNA extraction method for RAPD marker analysis in common bean (Phaseolus vulgaris). Bean Imp. Coop. 36:10-11.

1992

Kelly, J.D. 1992. Breeding strategies for genetic control of BCMV. Bean Imp. Coop. 35:60-61.

Miklas, P.N. and Kelly, J.D. 1992. Identifying bean DNA polymorphisms using the polymerase chain reaction. Bean Imp. Coop. 35:21-22.

Malburg, M.E, and Kelly, J.D. 1992. Pinto bean ideotype for the midwest. Bean Imp. Coop. 35:15-16.

Ramirez-V, P., Kelly, J.D. and Smucker, A.J.M. 1992. Identification of traits important in breeding drought tolerant beans. Bean Imp. Coop. 35:71.

1991

Kelly, J.D., Nodari, R. and Gepts, P. 1991. Restriction fragment length polymorphisms in dry beans. Bean Imp. Coop. 34:143-144.

Wassimi, N., Kelly, J.D. and Taylor, J. 1991. Variability in Necrosis Test for BCMV. Bean Imp. Coop 34:9-10.

Ramirez P., Kelly, J.D. and Wassimi, N. 1991. Morphological and physiological characteristics associated with yield under drought in dry bean (P. vulgaris). Bean Imp. Coop 34:116-117.

1990

Mbewe, M., Kelly, J.D., Saettler, A.W. 1990. Genetic relationship between reaction of bean genotypes to bean common mosaic virus and bean yellow mosaic virus. Bean Imp. Coop. 33:71.

1989

Kelly, J.D. 1989. The presence of dwarf lethal DL genes in Phaseolus germplasm, lines, and cultivars. Bean Imp. Coop. 32:73-74.

Acquaah, G., Adams, M.W., and Kelly, J.D. 1989. Broad sense heritability estimates of several architectural and seed traits in dry beans (Phaseolus vulgaris). Bean Imp. Coop. 32:75-76.

Kelly, J.D. 1989. Plant breeding--what lies in the future? Plant Genetics Newsletter 5(3):16-17.

1988

Kelly, J.D. 1988. Is there more than one source of the "I" gene. Bean Imp. Coop. 31:148-149.

Kelly, J.D. 1988. The impact of the dwarf lethal (DL) genes on breeding programs at MSU. Bean Imp. Coop. 31:192-193.

Kelly, J.D. 1988. Public Breeding Concerns. Bean Imp. Coop. 31:12.

Kelly, J.D., Adams, M.W. and Varner, G.V. 1988. Yield stability among gene pools of Phaseolus vulgaris. Bean Imp. Coop. 31:38-39.

Adams, M.W., Kelly, J.D. and Saettler, A. W. 1988. A gene for resistance to common blight (Xanthamonas campestris pv. phaseoli). Bean Imp. Coop. 31:73-74.

1986

Kelly, J.D. and Adams, M.W. 1986. Utilization of phenotypic recurrent selection in bean breeding. Bean Imp. Coop. 29:11-12.

Kelly, J.D. and Saettler, A.W. 1986. Severe virus outbreaks affect Michigan dry bean production. Bean Imp. Coop. 29:9-10.

Kelly, J.D., Varner, G.V. and Adams, M.W. 1986. The effect of different dry bean growth habits on yield stability. Bean Imp. Coop. 29:58-59.

1985

Kelly, J.D., Msuku, W.A.B. and Saettler, A.W. 1985. Genetics of resistance to Malawian halo blight isolates. Bean Imp. Coop. 28:80-81.

1984

Kelly, J.D. and Adams, M.W. 1984. Use of recurrent selection in pinto bean breeding. Bean Imp. Coop. 27:7-8.

Kelly, J.D., Saettler, A.W. and Morales, M. 1984. New necrotic strain of bean common mosaic virus in Michigan. Bean Imp. Coop. 27:38-39.

1983

Kelly, J.D., Saettler, A.W. and Morales, M. 1983. New necrotic strain of bean common mosaic virus in Michigan. Bean Imp. Coop. 26:49-50.

1982

Kelly, J.D. 1982. Varietal and class diversity and accentuation of bean disease problems in a major production area. Rep. Bean Imp. Coop. and Nat. Dry Bean Res. Conf. Jan 1982, pp. 12-14.

1981

Izquierdo, J.A., Kelly, J.D., Hosfield, G.L. and Uebersax, M.A. 1981. Parental influence on white and off-white seed coat color in common bean. Bean Imp. Coop. 24:44-45.

Kelly, J.D. 1981. New sources of resistance to the delta race of anthracnose. Bean Imp. Coop. 24:47-48.